La grille régionale est un outil de production pour les chercheurs. Cette article présente quelques publications récentes comportant des résultats obtenus avec la grille de calcul régionale.

 

Chémoinformatique

J. Meslamani, R. Bhajun, F. Martz and D. Rognan: Computational Profiling of Bioactive Compounds Using a Target-Dependent Composite Workflow. J. Chem. Inf. Model. 2013, 53 (9), 2322–2333.

J. Meslamani, J. Li, J. Sutter, A. Stevens, H.-O. Bertrand and D. Rognan: Protein–Ligand-Based Pharmacophores: Generation and Utility Assessment in Computational Ligand Profiling. J. Chem. Inf. Model. 2012, 52 (4), 943–955.

Imagerie biomédicale


P. Aguiar, F. Pino, J.  Silva-Rodríguez, J. Pavía, D. Ros, A. Ruibal and Z. El Bitar:  Analytical, experimental, and Monte Carlo system response matrix for pinhole SPECT reconstruction. Med. Phys. 2014, 41 (3), 032501.
DOI: 10.1118/1.4866380

E. Brard and D. Brasse: Axially oriented crystal geometry applied to small-animal PET system: a proof of concept. IEEE Trans. Nucl. Sci. 2013, 60 (3), 1471-1477.

C. Bopp, J. Colin, D. Cussol, Ch. Finck, M. Labalme, M. Rousseau and D. Brasse: Proton computed tomography from multiple physics processes.  Phys. Med. Biol. 2013, 58, 7261-7276.

C. Champion, S. Incerti, H. Tran and Z. El Bitar: Electron and proton elastic scattering in water vapour. Nucl. Instrum. and Meth. 2012, B 273, 98-101.

Z. El Bitar, V. Bekaert and D. Brasse: Acceleration of fully 3D Monte Carlo based system matrix computation for image reconstruction in small animal SPECT. IEEE Trans. Nucl. Sci. 2011, 58 (1), 121-132.
DOI: 10.1109/TNS.2010.2096292

 

Physique nucléaire et théorique

A. Alloul, M. Frank, B. Fuks and M. R. de Traubenberg: Chargino and neutralino production at the Large Hadron Collider in left-right supersymmetric models. J. High Energy Phys. 2013, 1310, 033.

A. Alloul, M. Frank, B. Fuks and M. R. de Traubenberg: Doubly-charged particles at the Large Hadron Collider. Phys.Rev. 2013, D88, 75004.

J.-L. Agram, J. Andrea, E. Conte, B. Fuks, D. Gelé and P. Lansonneur: Probing top anomalous couplings at the LHC with trilepton signatures in the single top mode. Phys. Lett. 2013, B725, 123.

S. Calvet, B. Fuks, P. Gris and L. Valery: Searching for sgluons in multitop events at a center-of-mass energy of 8 TeV. J. High Energy Phys. 2013, 1304, 43.

B. Fuks: Beyond the Minimal Supersymmetric Standard Model: from theory to phenomenology. Int. J. Mod. Phys. A 2013, 27, 1230007.
http://arxiv.org/abs/1202.4769

J. Debove, B. Fuks and M. Klasen: Joint resummation for gaugino-pair production at hadron colliders. Nucl. Phys. B 2011, 849, 64-79.
http://arxiv.org/abs/1102.4422

 

Physique des Hautes Énergies

CMS Collaboration: Search for monotop signatures in proton-proton collisions at √s = 8 TeV. Phys. Rev. Lett. 2015, 114, 101801.
http://arxiv.org/abs/arXiv:1410.1149

CMS Collaboration: Search for the associated production of the Higgs boson with a top-quark pair. JHEP 2014, 1409, 087.
http://arxiv.org/abs/1408.1682

CMS Collaboration: Alignment of the CMS tracker with LHC and cosmic ray data., JINST 2014, 9, P06009.
http://arxiv.org/abs/1403.2286

CMS Collaboration: Description and performance of track and primary-vertex reconstruction with the CMS tracker. JINST 2014, 9, P10009.
http://arxiv.org/abs/1405.6569

CMS Collaboration: Measurements of the ttbar charge asymmetry using the dilepton decay channel in pp collisions at √s = 7 TeV. JHEP 2014, 1404, 191.
http://arxiv.org/abs/1402.3803

CMS Collaboration: Evidence for the direct decay of the 125-GeV Higgs boson to fermions. Nature Phys. 2014, 10.
http://arxiv.org/abs/1401.6527

CMS Collaboration: Measurement of the t t-bar production cross section in the dilepton channel in pp collisions at √s = 8 TeV. JHEP 1402 2014, 024.
http://arxiv.org/abs/1312.7582

J-L. Agram, J. Andrea, M. Buttignol, E. Conte and B. Fuks: Monotop phenomenology at the Large Hadron Collider.  Phys. Rev. D 89 2014, 014028.
http://arxiv.org/abs/1311.6478

CMS Collaboration: Measurement of the ttbar production cross section and the top quark mass in the dilepton channel in pp collisions at √s =7 TeV. J. High Energy Phys. 2011, 7, 49.
arxiv.org/abs/1105.5661

CMS Collaboration: First Measurement of the Cross Section for Top-Quark Pair Production in Proton-Proton Collisions at √s = 7 TeV. Phys. Lett. B 2011, 695, 424-443.
arxiv.org/abs/1010.5994v1

CMS Collaboration: Measurement of W+W− Production and Search for the Higgs Boson in pp Collisions at √s =7 TeV. Phys. Lett. B 2011, 699, 25-47.
arxiv.org/abs/1102.5429

CMS Collaboration: Measurement of the ttˉ Production Cross Section in pp Collisions at 7 TeV in Lepton + Jets Events Using b-quark Jet Identification. Phys. Rev. D 2011, 84, 092004.
arxiv.org/abs/1108.3773

CMS Collaboration: Search for Supersymmetry in Events with b Jets and Missing Transverse Momentum at the LHC. J. High Energy Phys. 2011, 1107, 113.
arxiv.org/abs/1106.3272v1

CMS Collaboration: Measurement of the t-channel single top quark production cross section in pp collisions at √s = 7 TeV. Phys.Rev.Lett. 2011, 107, 091802.
arxiv.org/abs/1106.3052v1

CMS Collaboration: Measurement of BBbar angular correlations based on secondary vertex reconstruction at √s=7 TeV. J. High Energy Phys. 2011, 03, 136.
arxiv.org/abs/1102.3194v2

CMS Collaboration: First Measurement of the Cross Section for Top-Quark Pair Production in Proton-Proton Collisions at s=7 TeV. Phys. Lett. B. 2010, 695, 424-443.
arxiv.org/abs/1010.5994

CMS Collaboration: Observation of Long-Range, Near-Side Angular Correlations in Proton-Proton Collisions at the LHC. J. High Energy Phys. 2010, 1009, 091.
arxiv.org/abs/1009.4122

CMS Collaboration: First Measurement of Bose-Einstein Correlations in proton-proton Collisions at s=0.9 and 2.36 TeV at the LHC. Phys. Rev. Lett. 2010, 105, 032001.
arxiv.org/abs/1005.3294

CMS Collaboration: Transverse momentum and pseudorapidity distributions of charged hadrons in pp collisions at s= 0.9 and 2.36 TeV. J. High Energy Phys. 2010, 02, 041.
arxiv.org/abs/1002.0621

 

Protéomique

C. Carapito, A. Burel, P. Guterl, A. Walter, F. Varrier, B. Fabrice and A. Van Dorsselaer: MSDA, a proteomics software suite for in-depth Mass Spectrometry Data Analysis using grid computing. Proteomics 2014, 14 (9), 1014-1019.

T. Wasselin, S. Zahn, Y. Le Maho, A. Van Dorsselaer, T. Raclot and F. Bertile: Exacerbated oxidative stress in the fasting liver according to fuel partitioning. Proteomics 2014, 14 (16), 1905-1921.

S. Triboulet, C. Aude-Garcia, L. Armand, A. Gerdil, H. Diemer, F. Proamer, V. Collin-Faure, A. Habert, J. Strub, D. Hanau, N. Herlin, M. Carrière, A. Van Dorsselaer and T. Rabilloud: Analysis of cellular responses of macrophages to zinc ions and zinc oxide nanoparticles: a combined targeted and proteomic approach. Nanoscale 2014, 6 (11), 6102-6114.

M. I. Plumel, A. Stier, D. Thiersé, A. Van Dorsselaer, F. Criscuolo and F. Bertile: Litter size manipulation in laboratory mice: an example of how proteomic analysis can uncover new mechanisms underlying the cost of reproduction. Frontiers in Zoology 2014, 11 (41).
http://www.frontiersinzoology.com/content/pdf/1742-9994-11-41.pdf

M. Feve, J. M. Saliou, M. Zeniou, S. Lennon, C. Carapito, J. Dong, A. Van Dorsselaer, M. P. Junier, H. Chneiweiss, S. Cianferani, J. Haiech and M. C. Kilhoffer: Comparative expression study of the endo-G protein coupled receptor (GPCR) repertoire in human glioblastoma cancer stem-like cells, U87-MG cells and non malignant cells of neural origin unveils new potential therapeutic targets. PLoS One 2014, 9 (3), e91519.
http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0091519&representation=PDF

V. Cotte, L. Sabatier, G. Schnell, A. Carmi-Leroy, J. C. Rousselle, F. Arsene-Ploetze, L. Malandrin, N. Sertour, A. Namane, E. Ferquel and V. Choumet: Differential expression of Ixodes ricinus salivary gland proteins in the presence of the Borrelia burgdorferi sensu lato complex. J. Proteomics 2014, 96, 29-43.

A. Cebron, F. Arsene-Ploetze, P. Bauda, P. N. Bertin, P. Billard, C. Carapito, S. Devin, F. Goulhen-Chollet, J. Poirel and C. Leyval:
Rapid impact of phenanthrene and arsenic on bacterial community structure and activities in sand batches. Microb. Ecol. 2014, 67 (1), 129-44.

G. Schnell, A. Boeuf, B. Jaulhac, N. Boulanger, E. Collin, C. Barthel, S. De Martino and L. Ehret-Sabatier: Proteomic analysis of three Borrelia burgdorferi sensu lato native species and disseminating clones: Relevance for Lyme vaccine design. Proteomics 2015, 15, 1280–1290.

P. Ethuin, S. Marlard, M. Delosiere, C. Carapito, F. Delalande, A. Van Dorsselaer, A. Dehaut, V. Lencel, G. Duflos and T. Grard:
Differentiation between fresh and frozen–thawed sea bass (Dicentrarchus labrax) fillets using two-dimensional gel electrophoresis. Food Chemistry 2015, 176, 294-301.

D. Bertaccini, S. Vaca, C. Carapito, F. Arsène-Ploetze, A. Van Dorsselaer and C. Schaeffer-Reiss: An Improved Stable Isotope N-Terminal Labeling Approach with Light/Heavy TMPP To Automate Proteogenomics Data Validation: dN-TOP. J. Proteom. Res. 2013, 12, 3063-70.

L. Miguet, S. Lennon, L. Baseggio, A. Traverse-Glehen, F. Berger, N. Perrusson, M. Chenard, A. Galoisy, A. Eischen, C. Mayeur-Rousse, A. Maar, L. Fornecker,  R. Herbrecht, P. Felman, A. Van Dorsselaer, C. Carapito, S. Cianférani and L. Mauvieux: Cell-surface expression of the TLR homolog CD180 in circulating cells from splenic and nodal marginal zone lymphomas. Leukemia 2013, 27, 1748-1750.

M. Plumel, T. Wasselin, V. Plot, J.-M. Strub, A. Van Dorsselaer, C. Carapito, J.-Y. Georges and F. Bertile: Mass spectrometry-based sequencing and SRM-based quantitation of two novel vitellogenin isoforms in the leatherback sea turtle Dermochelys coriacea. J Proteom Res 2013, 12 (9), 4122-4135.